Check (with a local agent) to see if there are any pending lawsuits against the builder in that complex - that could cause some lenders to turn down loans - many ask to have a "condo questionaire" filled out by the management or association. If there is any pending litigation, it could factor in.
Not all banks require a questionaire, though.
Speak with a local mortgage rep and get their take on this.
My friend is questioning the same thing, but she already owns a unit in a northern NJ complex, and wanted to know how, or if, this would impact a sale.
Check it out.