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They always say, lightning doesn't strike twice in the same place, so I personally would not be worried about it happening again.
Write the pros and cons if you were to purchase the house. It sounds like you love what they have done with it, but that you may not get peace of mind. If you love the house so much - make sure you do your due diligence, have an inspection by a licensed inspector, gather all that you can from the contractors that worked on the house, check their standings with the commerce dept. - basically do your homework.
Are you always going to be concerned about the changes of lightning striking your house? What are some things that can be done to alleviate this?
Sound like a very nice house!